PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK01032.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NF-YC
Protein Properties Length: 255aa    MW: 28495.1 Da    PI: 6.3944
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK01032.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.94.5e-56721761102
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi+p
  PK01032.1  72 QLQMFWANQmqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIP 171
                89******988889************************************************************************************** PP

      NF-YC  98 rdelk 102
                rdelk
  PK01032.1 172 RDELK 176
                **975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.61E-3453166IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.7E-3786158IPR009072Histone-fold
PfamPF008082.1E-2194157IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
XQPVVGMVTG SGQMSYGPSS YQTAPMVASG APAVAVPSPT QPPANFSNSS HQLAFQQAQH  60
FHHQQQQQQQ QQLQMFWANQ MQEIEQTTDF KNHSLPLARI KKIMKADEDV RMISAEAPVI  120
FAKACEMFIL ELTLRSWIHT EENKRRTLQK NDIAAAISRT DVFDFLVDII PRDELKEEGL  180
GVPKATLPVV GSPADMPYYY VPQQHPAGPT GMIMGKPVDQ AAMYAAQQPR PPMAFVPWPQ  240
TQPQQQQQQQ PQTDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C2e-427317219119HapE
4g91_C2e-427317219119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144150RRTLQKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015882054.11e-143PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_015882053.11e-143PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_015882052.11e-143PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_015882051.11e-143PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_015882050.11e-143PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_015882049.11e-143PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ8LCG71e-83NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLM5WH061e-140M5WH06_PRUPE; Uncharacterized protein
STRINGPOPTR_0005s09770.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123722836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-82nuclear factor Y, subunit C2